Solon P. Pissis: search on Z-Library

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1

Creating improvisations on chord progressions using suffix trees

Ayad, Lorraine A.K., Chemillier, Marc, Pissis, Solon P.

Journal:

Journal of Mathematics and Music

Year:

2019

Language:

english

File:

PDF, 531 KB

english, 2019

2

Circular pattern matching with k mismatches

Charalampopoulos, Panagiotis, Kociumaka, Tomasz, Pissis, Solon P., Radoszewski, Jakub, Rytter, Wojciech, StraszyÅski, Juliusz, WaleÅ, Tomasz, Zuba, Wiktor

Journal:

Journal of Computer and System Sciences

Year:

2021

File:

PDF, 518 KB

2021

3

[IEEE 2010 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010) - Corfu, Greece (2010.11.3-2010.11.5)] Proceedings of the 10th IEEE International Conference on Information Technology and Applications in Biomedicine - Mapping short reads to a genomic sequence with circular structure

Iliopoulos, Costas S., Okanlawon, Tewogboye A., Pissis, Solon P., Tischler, German

Year:

2010

Language:

english

File:

PDF, 298 KB

english, 2010

4

SMART: SuperMaximal Approximate Repeats Tool

Ayad, Lorraine A K, Charalampopoulos, Panagiotis, Pissis, Solon P, Martelli, Pier Luigi

Journal:

Year:

2019

File:

PDF, 297 KB

2019

5

Creating improvisations on chord progressions using suffix trees

Ayad, Lorraine A.K., Chemillier, Marc, Pissis, Solon P.

Journal:

Journal of Mathematics and Music

Year:

2019

File:

PDF, 531 KB

2019

6

Comparing Degenerate Strings

Alzamel, Mai, Ayad, Lorraine A.K., Bernardini, Giulia, Grossi, Roberto, Iliopoulos, Costas S., Pisanti, Nadia, Pissis, Solon P., Rosone, Giovanna, ter Beek, Maurice, Koutny, Maciej, Rozenberg, Grzegor

Journal:

Fundamenta Informaticae

Year:

2020

File:

PDF, 299 KB

2020

7

Advances in Algorithms & Combinatorics on Strings (Honoring 60th birthday for Prof. Costas S. Iliopoulos)

Crochemore, Maxime, Pissis, Solon P.

Journal:

Theoretical Computer Science

Year:

2018

Language:

english

File:

PDF, 111 KB

english, 2018

8

Order-preserving indexing

Crochemore, Maxime, Iliopoulos, Costas S., Kociumaka, Tomasz, Kubica, Marcin, Langiu, Alessio, Pissis, Solon P., Radoszewski, Jakub, Rytter, Wojciech, Waleń, Tomasz

Journal:

Theoretical Computer Science

Year:

2015

Language:

english

File:

PDF, 859 KB

english, 2015

9

Influence maximization in the presence of vulnerable nodes: A ratio perspective

Chen, Huiping, Loukides, Grigorios, Pissis, Solon P., Chan, Hau

Journal:

Theoretical Computer Science

Year:

2021

File:

PDF, 864 KB

2021

10

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - MoTeXach

Pissis, Solon P., Stamatakis, Alexandros, Pavlidis, Pavlos

Year:

2007

Language:

english

File:

PDF, 295 KB

english, 2007

11

Fast circular dictionary-matching algorithm

ATHAR, TANVER, BARTON, CARL, BLAND, WIDMER, GAO, JIA, ILIOPOULOS, COSTAS S., LIU, CHANG, PISSIS, SOLON P.

Journal:

Mathematical Structures in Computer Science

Year:

2017

Language:

english

File:

PDF, 205 KB

english, 2017

12

Fast phylogenetic inference from typing data

Carriço, João A., Crochemore, Maxime, Francisco, Alexandre P., Pissis, Solon P., Ribeiro-Gonçalves, Bruno, Vaz, Cátia

Journal:

Algorithms for Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.72 MB

english, 2018

13

Frequency Covers for Strings

Mhaskar, Neerja, Smyth, W. F., Charalampopoulos, Panagiotis, Crochemore, Maxime, Pissis, Solon P.

Journal:

Fundamenta Informaticae

Year:

2018

Language:

english

File:

PDF, 259 KB

english, 2018

14

Efficient Approaches to Compute Longest Previous Non-overlapping Factor Array

Chairungsee, Supaporn, Charalampopoulos, Panagiotis, Crochemore, Maxime, Pissis, Solon P.

Journal:

Fundamenta Informaticae

Year:

2018

Language:

english

File:

PDF, 269 KB

english, 2018

15

On avoided words, absent words, and their application to biological sequence analysis

Almirantis, Yannis, Charalampopoulos, Panagiotis, Gao, Jia, Iliopoulos, Costas S., Mohamed, Manal, Pissis, Solon P., Polychronopoulos, Dimitris

Journal:

Algorithms for Molecular Biology

Year:

2017

Language:

english

File:

PDF, 2.05 MB

english, 2017

16

CNEFinder: finding conserved non-coding elements in genomes

Ayad, Lorraine A K, Pissis, Solon P, Polychronopoulos, Dimitris

Journal:

Year:

2018

Language:

english

File:

PDF, 223 KB

english, 2018

17

Fast algorithms for approximate circular string matching

Barton, Carl, Iliopoulos, Costas S, Pissis, Solon P

Journal:

Algorithms for Molecular Biology

Year:

2014

Language:

english

File:

PDF, 324 KB

english, 2014

18

[IEEE 2015 IEEE International Parallel and Distributed Processing Symposium Workshop (IPDPSW) - Hyderabad, India (2015.5.25-2015.5.29)] 2015 IEEE International Parallel and Distributed Processing Symposium Workshop - Generalised Implementation for Fixed-Length Approximate String Matching under Hamming Distance and Applications

Pissis, Solon, Retha, Ahmad

Year:

2015

Language:

english

File:

PDF, 376 KB

english, 2015

19

[ACM Press the CUBE International Information Technology Conference - Pune, India (2012.09.03-2012.09.05)] Proceedings of the CUBE International Information Technology Conference on - CUBE '12 - Detection of fixed length web spambot using REAL (read aligner)

Elloumi, Mourad, Hayati, Pedram, Iliopoulos, Costas S., Pissis, Solon P., Shah, Arfaat

Year:

2012

Language:

english

File:

PDF, 624 KB

english, 2012

20

emMAW: computing minimal absent words in external memory

Heliou, Alice, Pissis, Solon P., Puglisi, Simon J.

Journal:

Year:

2017

Language:

english

File:

PDF, 171 KB

english, 2017

21

Construction of Antimagic Labeling for the Cartesian Product of Regular Graphs

Oudone Phanalasy, Mirka Miller, Costas S. Iliopoulos, Solon P. Pissis, Elaheh Vaezpour

Journal:

Mathematics in Computer Science

Year:

2011

Language:

english

File:

PDF, 202 KB

english, 2011

22

Longest property-preserved common factor: A new string-processing framework

Ayad, Lorraine A.K., Bernardini, Giulia, Grossi, Roberto, Iliopoulos, Costas S., Pisanti, Nadia, Pissis, Solon P., Rosone, Giovanna

Journal:

Theoretical Computer Science

Year:

2020

File:

PDF, 566 KB

2020

23

Computing all subtree repeats in ordered trees

Christou, Michalis, Crochemore, Maxime, Flouri, Tomáš, Iliopoulos, Costas S., Janoušek, Jan, Melichar, Bořivoj, Pissis, Solon P.

Journal:

Information Processing Letters

Year:

2012

Language:

english

File:

PDF, 166 KB

english, 2012

24

Extending alignments with k-mismatches and ℓ-gaps

Barton, Carl, Iliopoulos, Costas S., Lee, Inbok, Mouchard, Laurent, Park, Kunsoo, Pissis, Solon P.

Journal:

Theoretical Computer Science

Year:

2014

Language:

english

File:

PDF, 285 KB

english, 2014

25

Transcriptome map of mouse isochores

Stilianos Arhondakis, Kimon Frousios, Costas S Iliopoulos, Solon P Pissis, German Tischler, Sophia Kossida

Journal:

Year:

2011

Language:

english

File:

PDF, 244 KB

english, 2011

26

Alignment-free sequence comparison using absent words

Charalampopoulos, Panagiotis, Crochemore, Maxime, Fici, Gabriele, Mercaş, Robert, Pissis, Solon P.

Journal:

Information and Computation

Year:

2018

Language:

english

File:

PDF, 719 KB

english, 2018

27

Pattern Matching and Consensus Problems on Weighted Sequences and Profiles

Kociumaka, Tomasz, Pissis, Solon P., Radoszewski, Jakub

Journal:

Theory of Computing Systems

Year:

2018

Language:

english

File:

PDF, 1.91 MB

english, 2018

28

[IEEE 2019 Data Compression Conference (DCC) - Snowbird, UT, USA (2019.3.26-2019.3.29)] 2019 Data Compression Conference (DCC) - Parameterized Text Indexing with One Wildcard

Ganguly, Arnab, Hon, Wing-Kai, Huang, Yu-An, Pissis, Solon P., Shah, Rahul, Thankachan, Sharma V.

Year:

2019

Language:

english

File:

PDF, 154 KB

english, 2019

29

An algorithm for mapping short reads to a dynamically changing genomic sequence

Costas S. Iliopoulos, Derrick Kourie, Laurent Mouchard, Themba K. Musombuka, Solon P. Pissis, Corne de Ridder

Journal:

Journal of Discrete Algorithms

Year:

2012

Language:

english

File:

PDF, 277 KB

english, 2012

30

Dynamic and Internal Longest Common Substring

Amir, Amihood, Charalampopoulos, Panagiotis, Pissis, Solon P., Radoszewski, Jakub

Journal:

Year:

2020

File:

PDF, 2.06 MB

2020

31

[IEEE 2009 9th International Conference on Information Technology and Applications in Biomedicine (ITAB 2009) - Larnaka, Cyprus (2009.11.4-2009.11.7)] 2009 9th International Conference on Information Technology and Applications in Biomedicine - Mapping uniquely occurring short sequences derived from high throughput technologies to a reference genome

Antoniou, Pavlos, Daykin, Jackie W., Iliopoulos, Costas S., Kourie, Derrick, Mouchard, Laurent, Pissis, Solon P.

Year:

2009

Language:

english

File:

PDF, 853 KB

english, 2009

32

Optimal computation of all tandem repeats in a weighted sequence

Carl Barton,Costas S Iliopoulos,Solon P Pissis

Journal:

Algorithms for Molecular Biology

Year:

2014

Language:

english

File:

PDF, 279 KB

english, 2014

33

[IEEE 2014 IEEE International Conference on Big Data and Cloud Computing (BdCloud) - Sydney, Australia (2014.12.3-2014.12.5)] 2014 IEEE Fourth International Conference on Big Data and Cloud Computing - Detection of Web Spambot in the Presence of Decoy Actions

Ghanaei, Vida, Iliopoulos, Costas S., Pissis, Solon P.

Year:

2014

Language:

english

File:

PDF, 132 KB

english, 2014

34

Global and local sequence alignment with a bounded number of gaps

Barton, Carl, Flouri, Tomáš, Iliopoulos, Costas S., Pissis, Solon P.

Journal:

Theoretical Computer Science

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

35

Linear-time superbubble identification algorithm for genome assembly

Brankovic, Ljiljana, Iliopoulos, Costas S., Kundu, Ritu, Mohamed, Manal, Pissis, Solon P., Vayani, Fatima

Journal:

Theoretical Computer Science

Year:

2015

Language:

english

File:

PDF, 294 KB

english, 2015

36

[IEEE 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW) - Cambridge, MA, USA (2013.05.20-2013.05.24)] 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum - A Generic Vectorization Scheme and a GPU Kernel for the Phylogenetic Likelihood Library

Izquierdo-Carrasco, Fernando, Alachiotis, Nikolaos, Berger, Simon, Flouri, Tomas, Pissis, Solon P., Stamatakis, Alexandros

Year:

2013

Language:

english

File:

PDF, 202 KB

english, 2013

37

[IEEE 2013 International Conference on Technological Advances in Electrical, Electronics and Computer Engineering (TAEECE) - Konya, Turkey (2013.05.9-2013.05.11)] 2013 The International Conference on Technological Advances in Electrical, Electronics and Computer Engineering (TAEECE) - Comparison for the detection of Virus and spam using pattern matching tools

Elloumi, Mourad, Mirza, Jalil Asghar, Hayati, Pedram, Pissis, Solon P., Iliopoulos, Costas S., Shah, Arfaat

Year:

2013

Language:

english

File:

PDF, 1.39 MB

english, 2013

38

[IEEE 2010 2nd Computer Science and Electronic Engineering Conference (CEEC 2010) - Colchester (2010.09.8-2010.09.9)] 2010 2nd Computer Science and Electronic Engineering Conference (CEEC) - Sub-nyquist audio fingerprinting for music recognition

Chang, Kaichun, Pissis, Solon, Jang, Jyh-Shing, Iliopoulos, Costas

Year:

2010

Language:

english

File:

PDF, 301 KB

english, 2010

39

Transcriptome activity of isochores during preimplantation process in human and mouse

Barton, Carl, Iliopoulos, Costas S., Pissis, Solon P., Arhondakis, Stilianos

Journal:

Year:

2016

Language:

english

File:

PDF, 495 KB

english, 2016

40

Efficient algorithms for shortest partial seeds in words

Kociumaka, Tomasz, Pissis, Solon P., Radoszewski, Jakub, Rytter, Wojciech, Waleń, Tomasz

Journal:

Theoretical Computer Science

Year:

2016

Language:

english

File:

PDF, 644 KB

english, 2016

41

Tree template matching in ranked ordered trees by pushdown automata

Flouri, Tomáš, Iliopoulos, Costas S., Janoušek, Jan, Melichar, Bořivoj, Pissis, Solon P.

Journal:

Journal of Discrete Algorithms

Year:

2012

Language:

english

File:

PDF, 639 KB

english, 2012

42

[IEEE 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Hong Kong, China (2010.12.18-2010.12.21)] 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - An algorithm for mapping short reads to a dynamically changing genomic sequence

Flouri, Tomas, Holub, Jan, Iliopoulos, Costas, Pissis, Solon

Year:

2010

Language:

english

File:

PDF, 375 KB

english, 2010

43

Faster algorithms for 1-mappability of a sequence

Alzamel, Mai, Charalampopoulos, Panagiotis, Iliopoulos, Costas S., Pissis, Solon P., Radoszewski, Jakub, Sung, Wing-Kin

Journal:

Theoretical Computer Science

Year:

2019

File:

PDF, 830 KB

2019

44

[IEEE 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing - Shanghai, China (2009.08.3-2009.08.5)] 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing - Practical and Efficient Algorithms for Degenerate and Weighted Sequences Derived from High Throughput Sequencing Technologies

Antoniou, Pavlos, Iliopoulos, Costas S., Mouchard, Laurent, Pissis, Solon P.

Year:

2009

Language:

english

File:

PDF, 887 KB

english, 2009

45

MoTeX-II: structured MoTif eXtraction from large-scale datasets

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 367 KB

english, 2014

46

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - Libgapmis: An ultrafast library for short-read single-gap alignment

Alachiotis, Nikolaos, Berger, Simon, Flouri, Tomas, Pissis, Solon P., Stamatakis, Alexandras

Year:

2012

Language:

english

File:

PDF, 877 KB

english, 2012

47

Circular sequence comparison: algorithms and applications

Grossi, Roberto, Iliopoulos, Costas S., Mercas, Robert, Pisanti, Nadia, Pissis, Solon P., Retha, Ahmad, Vayani, Fatima

Journal:

Algorithms for Molecular Biology

Year:

2016

Language:

english

File:

PDF, 1.94 MB

english, 2016

48

Querying highly similar sequences

Barton, Carl, Giraud, Mathieu, Iliopoulos, Costas S., Lecroq, Thierry, Mouchard, Laurent, Pissis, Solon P.

Journal:

International Journal of Computational Biology and Drug Design

Year:

2013

Language:

english

File:

PDF, 204 KB

english, 2013

49

On overabundant words and their application to biological sequence analysis

Almirantis, Yannis, Charalampopoulos, Panagiotis, Gao, Jia, Iliopoulos, Costas S., Mohamed, Manal, Pissis, Solon P., Polychronopoulos, Dimitris

Journal:

Theoretical Computer Science

Year:

2018

Language:

english

File:

PDF, 436 KB

english, 2018

50

libgapmis: extending short-read alignments

Alachiotis, Nikolaos, Berger, Simon, Flouri, Tomáš, Pissis, Solon P, Stamatakis, Alexandros

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.20 MB

english, 2013

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